Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs9926961 chr16:8709711 A/G 4.07E-5 509 9.93 17.58 24.03 KM Plot
LGG rs9928374 chr16:67811930 A/G 7.52E-12 509 6.47 30.47 21.7 KM Plot
LGG rs9929335 chr16:8710085 A/G 2.17E-7 502 8.17 17.2 24.05 KM Plot
LGG rs9935332 chr16:10848843 A/G 2.23E-5 502 23.53 20.32 8.17 KM Plot
LGG rs9935855 chr16:8709405 C/A 4.07E-5 509 9.93 17.58 24.03 KM Plot
LGG rs9936296 chr16:8709884 C/T 2.17E-7 502 8.17 17.2 24.05 KM Plot
LGG rs9938862 chr16:67723801 T/C 8.42E-12 508 21.6 31.63 6.47 KM Plot
LIHC rs10134935 chr14:95037079 T/C 5.13E-5 363 17.18 24.9 21.13 KM Plot
LIHC rs10139277 chr14:95035060 C/T 7.15E-5 367 17.07 26.07 22.4 KM Plot
LIHC rs10146582 chr14:95037778 G/A 3.5E-5 365 17.32 26.1 15.27 KM Plot
LIHC rs10148605 chr14:57693793 T/C 1.43E-5 364 20.33 17.83 3.83 KM Plot
LIHC rs10149354 chr14:95038368 C/T 6.88E-5 365 17.33 26.1 15.03 KM Plot
LIHC rs10164440 chr2:240288363 A/G 1.72E-5 368 19.95 20.42 10.12 KM Plot
LIHC rs10166161 chr2:37190695 A/G 1.27E-5 359 20.4 13.2 8.73 KM Plot
LIHC rs10182741 chr2:37165765 C/T 1.16E-5 365 20.5 12.17 8.73 KM Plot